Ming Ouyang
Assistant Professor
Computer Engineering & Computer Science Department
University of Louisville
Phone: 502-852-7533,
Fax: 502-852-4713,
Email: ming DOT ouyang AT louisville DOT edu
I took a position at University of Louisville in August 2007. I am in the process of moving this page to UofL. It will likely be linked to this page.
Teaching
- UofL CECS 420 Design of Operating Systems: Fall 2008, Spring 2008, Fall 2007.
- UMDNJ Informatics Institute
- GINF 5001 Fundamentals of Bioinformatics: Spring 2007, Fall 2006, Spring 2006, Fall 2005, Fall 2003.
- GINF 5004 Platforms and Applications: Fall 2003 -- 2006.
- GINF 5020 Biological Database Systems and Computational Genomics: Spring 2003 -- 2007.
- GINF 5030 Special Topics (DNA Microarray): Spring 2004, Fall 2003.
- UDel CISC 181 Introduction to Computer Science: Spring 2000.
- Rutgers CS 205 Introduction to Discrete Structures I: Summer 1999, Spring 1999, Fall 1998.
Everyone who is incapable of learning
has taken to teaching.
Oscar Wilde (1854 -- 1900)
The Decay of Lying , p.3
Research
My main research interests are in bioinformatics. Some projects produced these web pages:
I also work on the analysis of in-flight recorded data from commercial airline operations, with an emphasis on the evaluation of landing performance.
Publications
- Zhu L, Phadtare S, Nariya H, Ouyang M, Husson RN, Inouye M. The mRNA interferases, MazF-mt3 and MazF-mt7 from Mycobacterium tuberculosis target unique pentad sequences in single-stranded RNA. Molecular Microbiology 2008. [in press]
- Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs GK, Huang E, Morgan RW. Deep Sequencing of Chicken microRNAs. BMC Genomics 2008, 9:185. [Full article, highly accessed]
- Burd RS, Ouyang M, Madigan D. Bayesian logistic injury severity score: A method for predicting mortality using ICD-9 codes. Academic Emergency Medicine 2008, 15(5):466-475. [Abstract]
- Ouyang M, Garnett AT, Han TM, Lee A, Deng Y, Lee N, Liu HY, Amacher SL, Farber SA, Ho SY. A web based resource characterizing the zebrafish developmental profile of over 16,000 transcripts. Gene Expression Patterns 2008, 8:171-180. [Sicence Direct]
- Ahlborn GJ, Nelson GM, Ward WO, Knapp G, Allen JW, Ouyang M, Roop BC, Chen Y, O'Brien T, Kitchin KT, Delker DA. Dose
response evaluation of gene expression profiles in the skin of
K6/ODC mice exposed to sodium arsenite. Toxicology and Applied Pharmacology 2008, 227:400-416. [Science Direct]
- Liu A, Han R, Li J, Sun D, Ouyang M, Plummer M, Casaccia-Bonnefil P. The glial or neuronal fate choice of oligodendrocyte progenitors is
modulated by their ability to acquire an epigenetic memory. Journal of Neuroscience 2007,
27(27):7339-43. [Abstract]
- Jörnsten R, Ouyang M, Wang HY. A meta-data based method for DNA microarray imputation. BMC Bioinformatics 2007, 8:109. [Full text]
- Ouyang M, Hackler L, Cheng A. Identification of aircraft touchdown point in commercial operations. US Department of Transportation, Federal Aviation Administration, 2006, Report AR-06/25. [PDF]
- Jörnsten R, Wang HY, Welsh WJ, Ouyang M. DNA microarray data imputation and significance analysis of differential expression. Bioinformatics 2005, 21(22):4155-61. [Abstract]
- Duttagupta R, Tian B, Wilusz CJ, Khounh DT, Soteropoulos P, Ouyang M,
Dougherty JP,
Peltz SW. Global analysis of Pub1p targets reveals a coordinate control of gene expression
through modulation of binding and stability. Molecular and Cellular Biology 2005, 25:5499-513. [Abstract]
- Glatt C, Ouyang M, Welsh WJ, Green J, O’Connor J, Frame S, Everds N, Poindexter
G, Snajdr S, Delker D. Molecular characterization of thyroid toxicity: anchoring
gene expression profiles to biochemical and pathological endpoints. Environmental Health Perspectives 2005, 113(10):1354-61. [Full article]
- Ouyang M, Welsh WJ, Georgopoulos P. Gaussian mixture clustering and imputation
of microarray data. Bioinformatics 2004, 20(6):917-23. [Abstract]
- Roy A, Georgopoulos PG, Ouyang M, Freeman N, Lioy PJ. Environmental, dietary,
demographic, and activity variables associated with biomarkers of exposure for benzene
and lead.
Journal of Exposure Analysis and Environmental Epidemiology 2003, 13(6):417-26. [Abstract]
- Ouyang M, Case J, Tirunagaru V, Burnside J. Five hundred sixty-five triples of
chicken, human, and mouse candidate orthologs. Journal of Molecular Evolution 2003, 57(3):271-81. [Abstract]
- Ouyang M, Case J, Burnside J. Divide and conquer machine learning for a genomics
analogy problem, Lecture Notes in Artificial Intelligence, 2226:290-303, Springer-Verlag, 2001. [Abstract]
- Cheng A, Ouyang M. On algorithms for simplicial depth, Proceedings of the 13th
Canadian Conference on Computational Geometry (CCCG), 2001, 53-56. [PDF]
- Ouyang M. Implementations of the DPLL algorithm, Ph.D. dissertation, Rutgers University,
1999. Committee: Vašek Chvátal, Leonid Khachiyan, William Steiger,
Endre Boros. [PDF]
- Ouyang M. How good are branching rules in DPLL?, Discrete Applied Mathematics 1998,
89:281-286. [PDF]
Academic Appointments
- Assistant Professor, Department of Computer Engineering and Computer Science, J. B. Speed School of Engineering, University of Louisville, 2007-present.
- Adjunct Assistant Professor, Department of Pharmacology, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey,
2004-2007.
- Senior Applications Specialist, Informatics Institute, University of Medicine and Dentistry of New Jersey,
2003-2004.
- Research Teaching Specialist, Computational Chemodynamics Laboratory, Environmental and Occupational Health Sciences Institute, Rutgers University and University of Medicine and Dentistry of New Jersey, 2001-2002.
- Postdoctoral Fellow, Department of Computer and Information Sciences, University of Delaware, 1999-2001.
Education